Top 5 GST Billing Software in India (2025)

What Is GST Billing Software?

GST billing software is an application designed specifically for Indian businesses to create and manage invoices that comply with the Goods and Services Tax regime. Instead of manually calculating CGST, SGST, or IGST, this type of software automatically splits tax components, formats invoices with HSN/SAC codes, and ensures every bill carries the correct GSTIN details. In simple terms, it’s like having a built-in tax expert that prevents calculation errors and keeps you aligned with government guidelines.

Why Use GST Billing Software?

1. Accuracy Without the Headache: If you’ve ever spent hours fumbling through spreadsheets to split an 18% tax into CGST and SGST, you know how easy it is to make a mistake. A dedicated GST billing software does this split automatically—no more second-guessing whether you’ve applied the right rate.
2. Hassle-Free E-Invoicing: Once your annual turnover crosses ₹50 lakh (or if you supply e-invoices to certain B2B buyers), you must push your data to the Invoice Registration Portal (IRP). With GST invoice software, that push happens with a single click. You get an IRN (Invoice Reference Number) and QR code back instantly, saving you from logging into multiple portals.
3. Real-Time Compliance Updates: The GST Council can announce a rate change or a rule tweak at any time. Instead of downloading a gazette notification, waiting for your accountant to adjust rates manually, and then reprinting all your invoices, reliable GST billing software updates new slab rates within 48–72 hours of the official notification—and pops up an alert so you won’t miss it.
4. Faster Return Filing: Since your sales data is already in the system, filing GSTR-1 and GSTR-3B becomes a matter of exporting a JSON or CSV and uploading it to the GST portal. A quality tool will even flag mismatches between your sales register and the GSTN’s data, so you can catch discrepancies before the filing deadline.
5. Built-In Reporting & Analytics: Beyond just generating bills, many online billing software suites provide dashboards showing best-selling products, top customers, outstanding receivables, and more. This helps you make informed decisions—such as which SKU to reorder first or which clients consistently take 30 days to clear invoices.

Top 5 GST Billing Software in India

Below is our curated list of the best GST billing software (in no particular order), featuring solutions that make invoicing simple, compliant, and stress-free. We’ve placed Codezion Invoice at the top, followed by four other trusted names in the market.

1. Codezion Invoice

Overview: Developed by Codezion Softwares, Codezion Invoice is a cloud-based GST billing solution tailored for small and medium businesses. It promises an intuitive interface, fast invoice generation, and seamless GST compliance—ideal for entrepreneurs who don’t want a steep learning curve.

Key Highlights:

• One-Click E-Invoicing: Push your invoice data directly to IRP and fetch the QR code in seconds.
• Customizable Templates: Choose from multiple GST-compliant invoice formats, complete with HSN/SAC fields.
• Automatic Rate Updates: The moment the GST Council announces a rate change, Codezion Invoice fetches it and updates your product master.
• Multi-User Access: Grant your accountant view-only rights, while your sales team creates bills on the go via the mobile app.

Why Pick It? If you’re already associated with Codezion or building your tech ecosystem around Codezion Softwares, Codezion Invoice integrates seamlessly with other Codezion products. Plus, its commitment to quick updates means you seldom worry about new GST rules.

2. Tally.ERP 9 GST Billing Software

Overview: Tally is practically synonymous with accounting in India. Its GST-ready version offers a robust set of features, making it a top choice for businesses that need both invoicing and full-scale accounting.

Key Highlights:

• Integrated Accounting & Billing: Your sales invoices automatically flow into ledgers, trial balance, and P&L statements.
• Offline + Online Modes: Work offline and sync data later, or choose TallyPrime’s hosted solution for instant updates.
• E-Invoice Module: Submit large invoices (above ₹5 crore turnover) to IRP without leaving the Tally environment.
• Inventory Management: Track batch, expiry date, and stock locations natively.

Why Pick It? If you already maintain your books in Tally, adding GST billing is a natural step. It’s ideal for businesses that want a single platform for invoicing, purchase tracking, and financial reporting.

3. Zoho Books GST Billing Software

Overview: Zoho Books is a cloud accounting suite with a dedicated GST edition. Beyond simple invoicing, it covers end-to-end accounting—making it a solid pick if you want both a GST invoice software and general ledger management.

Key Highlights:

• Cloud-Native with Mobile App: Create invoices, receive payments, and even file GSTR-3B from your smartphone.
• Client Portal: Your B2B customers can view, download invoices, and make online payments, giving you faster receivables.
• Auto GST Rate Detection: When you add a new product, Zoho Books suggests HSN codes and the correct GST rate based on product category.
• Bank Feeds & Reconciliation: Auto-match bank transactions to invoices, so you spend less time in Excel.

Why Pick It? If you’re looking for a scalable solution that grows with you, Zoho Books ties into Zoho’s larger CRM, HR, and project management ecosystem—making it a versatile choice for growing startups.

4. QuickBooks Online GST Billing Software (India)

Overview: QuickBooks Online has tailored its global accounting platform to India’s GST ecosystem. It’s cloud-based, easy to set up, and particularly popular with freelancers and consultants.

Key Highlights:

• Easy Setup Wizard: In less than 10 minutes, you can configure your company profile, GSTIN, and invoice template.
• GST Return Module: Automatically prepare GSTR-1 and GSTR-3B data for export—no manual data entry on the government portal.
• Payment Gateway Integrations: Accept online payments (PayPal, Stripe, Razorpay) directly from invoices to improve cash flow.
• Smart Reporting: Get insights like “Overdue Payments” and “Top 5 Customers by Revenue” with a single click.

Why Pick It? If you need an online billing software that’s quick to implement and has a gentle learning curve, QuickBooks Online is a safe bet—especially if you work remotely or have a distributed team.

5. MargERP 9+ GST Billing Software

Overview: MargERP 9+ is a full-fledged ERP solution with a strong emphasis on retail and distribution. While it’s more feature-rich (and slightly more complex) than lighter tools, it excels at handling large inventories and multiple warehouses.

Key Highlights:

• Enterprise-Grade Inventory: Manage multiple warehouses, batch tracking, and expiry dates—perfect for FMCG, pharma, and retail.
• Comprehensive GST Module: From invoice generation to return filing (GSTR-1, GSTR-3B, GSTR-9), everything happens within Marg’s interface.
• User Roles & Permissions: Define granular permissions for sales clerks, purchase managers, and finance heads.
• Customization & Integrations: APIs let you connect MargERP with POS machines, weigh-bridges, and e-commerce platforms.

Why Pick It? If you operate a chain of grocery stores, pharmacies, or large-scale distributors, MargERP 9+ offers the depth you need—albeit with a steeper learning curve.

Key Features to Look for in GST Billing Software

• GST Compliance & E-Invoicing Support:
  • Auto-calculate CGST, SGST, or IGST based on product HSN/SAC.
  • Push invoices to IRP for e-invoice generation if you meet the ₹50 lakh turnover threshold or serve large B2B clients.
• Customizable Invoice Templates:
  • Choose from clean, professional templates that include your logo, GSTIN, HSN/SAC code fields, and authorized signatory space.
• Automatic Tax Rate Updates:
  • Look for vendors who pledge to push new GST rate changes within 48–72 hours of a government notification. This ensures you don’t accidentally send a 12% invoice when the rate jumped to 18%.
• Multi-User & Multi-Location Access:
  • Cloud-based tools should let you create role-based logins (e.g., Admin, Accountant, Sales).
  • Maintain separate invoice series and stock registers for each branch while syncing data in real time.
• Inventory Management:
  • Basic stock-in/stock-out tracking.
  • Batch, expiry, and location management for businesses dealing with perishable or serialized products.
• Reporting & Analytics:
  • Dashboard showing top-selling SKUs, pending payments, taxable turnover, and GST liability summaries.
  • Export data for deeper analysis in Excel or Power BI.
• Return Filing & Reconciliation:
  • Auto-populate GSTR-1 and GSTR-3B return formats.
  • Highlight mismatches between sales invoices and what the GST portal shows, so you can correct errors before the deadline.
• Scalability & Integrations:
  • Ability to add more users or modules (like CRM or payroll) as your business grows.
  • API connectivity with e-commerce platforms, payment gateways, or existing ERP solutions.

How to Choose the Best GST Billing Software

Selecting the best GST billing software for your business depends on your unique needs. Here’s a quick decision-making guide:

• Assess Business Size & Complexity:
  • Small Business or Freelancer: Look for simple, cloud-based solutions (e.g., QuickBooks Online, Zoho Books) that can be set up in minutes.
  • Growing SME: Consider Codezion Invoice or Tally.ERP 9, which balance ease of use with room to expand.
  • Large Enterprise or Distribution Chain: Go for MargERP 9+ or similar ERP suites that handle complex inventory, multiple warehouses, and advanced reporting.
• Budget & Pricing Model:
  • Subscription-Based (SaaS): Monthly or annual plans that often include automatic updates and cloud hosting.
  • One-Time License (Desktop): A larger upfront payment, with optional yearly maintenance fees for updates.
  • Compare total cost of ownership: license fees + training + future add-ons.
• Ease of Use & Training Requirements:
  • Cloud solutions often have intuitive, modern interfaces—ideal if you’re not tech-savvy.
  • Desktop ERP tools (like MargERP 9+) may require dedicated training for your accounting team.
• Vendor Reputation & Support:
  • Read user reviews on platforms like G2, Capterra, or Google. Look specifically for comments about how quickly the vendor responds to GST rule changes or technical support tickets.
  • Check if local support offices exist near you (especially important if you’re in a tier-2 or tier-3 city).
• Future Scalability:
  • Even if you’re a small shop today, pick a tool that lets you add more users or modules (like payroll, CRM, or advanced inventory) without requiring a full migration later.

Conclusion

GST billing software isn’t just about generating invoices—it’s about safeguarding compliance, saving time, and gaining real-time visibility into your business’s financial health. Here’s a quick recap of our Top 5 GST billing software:

• Codezion Invoice: Best for seamless integration with Codezion’s ecosystem and rapid updates.
• Tally.ERP 9: Ideal if you need both invoicing and full-scale accounting in one place.
• Zoho Books: Great for cloud-native accounting with built-in GST compliance and mobile access.
• QuickBooks Online: Perfect for freelancers and small teams that want a quick, easy setup.
• MargERP 9+: Enterprise-grade power for large distributors and multi-warehouse operations.

Remember to match your choice with your business size, budget, and growth plans. Whether you pick a lean, cloud-based solution or a comprehensive ERP, the right software will help you file returns in minutes, avoid costly tax mistakes, and focus on what really matters—growing your business.

Frequently Asked Questions (FAQ)